Sentence examples for optimizing the modularity from inspiring English sources

Given a graph G, MODUA finds communities by optimizing the modularity score locally and it terminates until a maximal modularity score is obtained.

Then the topological structure revealed by optimizing the modularity for A r is that of large groups for small values of r, and smaller groups for large values of r, all of which are strictly embedded in the original topology.

Greedy optimization method attempts to optimize the "modularity" of a partition of the network.

Several optimization methods attempt to optimize the " modularity" of a partition of the network [30].

Louvain optimizes the modularity measure of a graph using a greedy search paradigm.

This method is based on a greedy algorithm that attempts to optimize the modularity of a partition of a given network.

Finally, we optimized the modularity in each cellular compartment individually (Additional file 1, Figure S3).

In this work, we improve the algorithm of Newman [ 18] to optimize the modularity score.

To determine communities in the graph, a fast-greedy algorithm was used to optimize the modularity of a partition of the network [ 57].

We can adopt the corresponding spectral algorithms and use the leading k eigenvectors of 2 A − B to optimize the modularity density D. To obtain the final network partition, we apply the k-means clustering method to cluster eigenvectors.

For each network, protein communities were identified by optimizing the network modularity [ 89] (Additional file 1: Supplementary Methods, Additional file 2: Figure S1, Additional file 3: Figure S2 and Additional file 4: Figure S3).