As the optimized sequences achieve the highest absolute degree of optimization for replication rate, whereas those in the full model do not, the former does replicate faster also in the full model, when μ = 0.
Because this is a systematic algorithm, one could envision an automated system that starts with a target protein, generates a lead sequence from a sparse random library, optimizes the peptide via thermodynamic additivity and outputs an optimized sequence.
All bacterial genes are codon optimized sequences.
The optimized sequence is shown in Figure 1 in red.
symbols and for optimized sequences (Section 6) with QPSK and 16-QAM input alphabets.
channel input symbols yield a higher spectral efficiency in comparison to the optimized sequences design.
Moreover, it can be observed that the optimized sequences (Section 6) yield a slightly larger achievable rate than RLL sequences.
In the switching tables, the three components of each synthesized voltage vector are arranged in optimized sequence.
A dynamic simulation tool of the TCAP has been developed in order to propose an optimized sequence of production.
Less optimized sequences dwell much longer in the unfolded state and/or off-pathway intermediates than do Gō-like models.
