Sentence examples for optimized dynamics from inspiring English sources

The optimized dynamics are shown in panels (e - h).

The gate error is measured with respect to the exact target gate when using the square-modulus functional, and with respect to the closest geometric phase gate to the optimized dynamics in all other cases.

We firstly apply three different methods, molecular dynamics (MD) simulation, B-FITTER and framework rigidity optimized dynamics algorithm (FRODA) to determine the flexible regions of Photinus pyralis luciferase: Fragment 197 207; Fragment 471 481 and Fragment 487 495.

Framework rigidity optimized dynamics algorithm (FRODA) is a computationally inexpensive method for sampling protein conformational space that employs a Lagrangian constraints-based approach, outputting an ensemble of structures that obey pre-defined constraints on bond lengths and angles, hydrogen bonds and hydrophobic interactions.

A weak form of the principle, however, might be possible: analogously to the optimized information transmission in neurons [67], [17], [16], over time evolution might result in organisms that implement a suitable informationally optimal dynamics, at least to some approximation.

Employing a previously derived model to describe intra-diffusion coefficients in liquid mixtures based on molecular simulations of spherical Lennard Jones particles [T. Merzliak, A. Pfennig, Mol. Simul. 30 (7) (2004) 459 468], an improved set of coefficients was obtained from optimized molecular dynamics simulations.

Here, we seek to complement these reviews by organizing current knowledge of the physiological roles of Prxs, exploring how evolution has optimized Prx dynamics and thermodynamics to modulate their sensitivity to hyperoxidation, assessing the distribution of its partner enzyme sulfiredoxin (Srx), and describing how drug design might take advantage of the conformational changes that Prxs undergo.

In this work we present an optimized computational fluid dynamics (CFD) model capable of efficiently running steady-state and transient simulations of both RO and FO at low computational cost.

Based on the optimized model, molecular-dynamics simulations in explicit solvent environments were carried out by using the AMBER11 package, for the entire protein, in order to characterize the dynamical behavior of the two flaps.

The conformers are optimized with torsion angle dynamics during protein structure refinement.

In this study, a small-scale pressurized cyclone combustor (PCC) was designed and optimized using computational fluid dynamics (CFD) simulation.