However, to the best of our knowledge, the only pairwise GPU implementation with optimized space complexity tested on the chromosome level is CUDAlign (Sandes and Melo, 2013), but it writes large amount of data to hard disk, uses a single card, and it is not publicly available.
An optimized low-complexity amplitude approximation and its hardware synthesis results are also studied.
As shown in Fig. 4, this protocol contains three alternative sub-protocols that are each optimized for low-complexity samples in solution, protein gel bands, or high-complexity samples.
In order to achieve the best properties, the deposition process must be optimized and, given its complexity, this optimization can only be effectively done using mathematical simulation methods.
Among them, we pay attention to the topological complexity of optimized designs which are difficult to quantify.
This architecture has advantages of providing reduced complexity and optimized parallel processing of many channels, while being configurable via software.
Therefore, the subcarriers have to be jointly optimized, which requires a complexity that becomes prohibitively high if M is large.
In particular, we develop a novel GPU-based polyphase channelizer architecture that delivers high throughput and provides reduced complexity and optimized parallel processing of many channels, while being configurable via software.
Irrespective of pedagogic approach, more multifaceted pharmacological reasoning and decision-making ought to be expanded and optimized, with a progressive complexity within respective curricula.
Our architectures are highly optimized and have low-complexity based on irreducible all one polynomial (AOP).
