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Maximum likelihood phylogenetic trees were produced using RAxML version 7.3.0 using the rapid bootstrap analysis and the general time reversible model of nucleotide substitution with optimization and categorization of per-site substitution rates on 500 distinct trees (raxmlHPC -f a -m GTRCAT -x 1234 -N 500) (Stamatakis, 2006) and visualized in iTOL (Letunic and Bork, 2007, 2011).
Phylogenetic trees were produced by maximum likelihood using RAxML version 7.3.0, executing the rapid bootstrap analysis and the general time reversible model of nucleotide substitution with optimization and categorization of per-site substitution rates (50 rate categories) on 1000 distinct trees (raxmlHPC -e 0.1 -f a -c 50 -m GTRCAT -x 92957 -N 1000 -p 3212) (Stamatakis, 2006).
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