Sentence examples for optimization affinity from inspiring English sources
Generation of high sensitivity FRET sensors is inherently empirical and requires multi-parameter optimization (affinity, brightness, dynamic range, etc) (Okumoto, 2012).
The binding modes of compounds 1 and 3 are compatible with ligand growing for optimization of affinity for BAZ2A and selectivity against the close homologue BAZ2B.
Multiple molecular dynamics simulations and a dozen co-crystal structures at high resolution provide useful information for further optimization of affinity for the BRPF1 bromodomain.
The selection and optimization of the affinity extraction processes have also been discussed.
Simultaneous optimization of binding affinity for wild-type RT, tolerance for viral mutations, and physical properties is pursued.
The electrostatic complementarity of the enzyme to its ligands was assessed using measures derived from affinity optimization theory.
We describe herein the affinity optimization of an initial hit to give 2- 2-chlorobenzylamino -1- cyclohexylmethyl -1H-benzo[d]imidazole-5-carboxamide (1), which was identified using our proprietary Automated Ligand Identification System (ALIS).1 The X-ray co-crystal structure of 1 was solved and revealed several key interactions and opportunities for further optimization in the ATP site of AccC.
The results of this study highlight the difficult balance between optimization of PfPK5 affinity and binding selectivity for PfPK5 over its closest human homologue HsCDK2.
Chapter 4 includes novel methods such as particle swarm optimization based on affinity propagation (PSOAP), and transfer learning for differential evolution (TRADE), another machine learning approach for extending differential evolution.
However, these compounds are comparably lipophilic (clogP = 0.20 and 1.97, respectively [25]), and their compact structure complicates further optimization of PSMA affinity and pharmacokinetics.
Additionally, we are developing an affinity optimization method for the peptide arms of the synbody (M. Greving, N. Woodbury, P.E.B, C.W.D and S.A.J., unpublished results) that could also be used to improve affinity and specificity.
