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is included under one of the Read Codes for abdominal pain (196..).
In these cases, no variant can be detected in one of the read types (i.e. the consensus sequence is non-ambiguous in one of the read types), but the opposing read type exhibits variation (ambiguous consensus) at a given position (e.g. T/T/W).
From this population, all women with an incident diagnosis of ovarian cancer recorded during 1 June 2002 to 31 May 2007 (ie, with one of the Read codes: B440.00 (malignant neoplasm of ovary), B440.11 (cancer of ovary) or B44.00 (malignant neoplasm of ovary and other uterine adnexa)) were identified (n=1107).
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Clicking on one of the reads brings up an information page which shows details about the read and a text representation of the alignment.
b The value in parenthesis is the number of unpaired reads for which one of the reads in a pair was discarded during the preprocessing to remove low quality reads.
In the alignment, paired reads were removed if one of the reads was not uniquely mapped.
Mark the bases with 'in_NUMTs' if one of the reads that covers it also maps to a NUMT sequence.
When using read pairs, the stringent mapping algorithm can sometimes map one of the reads in the pair, but not the other.
In pSYSA, four sites were reported as putative SNPs, but all of them represent sites having only two reads and one of the reads matched database sequence.
A consistent match position was one that matched in the genome in at least one of the reads of the multiple sequence alignment.
If only one of the reads exceeded the length cutoff (618 Mbp) it was added to the set of the single-end reads (1,285 Mbp).
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Since I tried Ludwig back in 2017, I have been constantly using it in both editing and translation. Ever since, I suggest it to my translators at ProSciEditing.

Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com