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The POTRA domains for conserved BamA proteins with five POTRA domains were predicted based on their alignment to the sequence A1KRL4_NEIMF, which was aligned with, and the POTRA domains defined based on, the BamA Neisseria gonorrhoeae structure (Noinaj et al. 2013); the alignment with structural information was obtained through phyre2.
"Renzi and Berlusconi's ideal candidate would be a weak figure, politically dependent on their alignment," said Wolfango Piccoli, managing director at Teneo Intelligence.
They thus suffer from relying on fragile fiber tapers, angled-polished fibers, coupling prisms, etc. with a critical dependence on their alignment.
From a total of 195 probe sets, 176 could be mapped to the sorghum genome based on their alignment with a sorghum gene ("Materials and methods").
To determine whether the keratometric and refractive surgical effects of paired intrastromal corneal ring segments (ICRS) depend on their alignment relative to steep and flat topographic meridians.
According to the Hertzian contact theory, elastic compression of laterally-touching cylindrical bodies exhibits a various range of contact stiffness depending on their alignment angles.
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The potential transcripts that are derived from more than one exon (based on their alignments with the Musa genome) or from a single exon but having a BLAST hit to known protein(s) at the cutoff E-value 1e-5 were considered to be more likely transcribed from genuine genes and are reported as novel banana transcripts in this study.
We used the metagenome analysis program MEGAN (Huson et al., 2011) to assign reads to KEGG orthology (KO) groups based on their alignments.
For plant species with complete genome information, conserved and novel miRNAs can be conveniently identified based on their alignments to the genome and known miRNAs in the miRBase and analysis of their pre-miRNA stem-loop structures.
The accuracy of marker positions in the genome is reflected by the order of scaffolds on the chromosomes as scaffolds were placed on chromosomes based on their alignments to markers.
In this species, great use was made of sheep BAC-end sequences (BES), which were assembled in a consensus manner based on their alignments to cattle, human and dog sequence assemblies.
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