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We also derive a stochastic approach for sampling trips on the tree based on a Monte-Carlo approach.
The phylogenetic analysis of the time lag showed five evolutionary transitions on the tree based on mtDNA (Fig. 3) and six transitions on the tree based on equal-length branches.
The latter relationship is also visible on the tree based on number of rearrangements (supplementary fig. 7, Supplementary Material online).
One difference was that group C, which occupied an intermediate position on the tree based on SSRs, occurred at a more distant position from groups [B-E-A] within group D based on RFLPs.
The cytogenetic data allow to propose an evolutionary tree in which H. g. occidentalis emerges first, followed by H. g. griseus, and H. g. meridionalis[ 10], whereas on the tree based on cytochrome b and 12S sequences, H. g. meridionalis appears as a sister clade of the other H. griseus.
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This program differentiates mutation and recombination event on each branch of the tree based on the density of polymorphisms.
The third stage involves refinement of the tree: Based on the tree, bipartitions of the dataset are produced; their profiles are extracted and realigned to each other.
Create leaves of the tree based on the above guides.
Only the tree based on neighbor joining network is shown in Figure 5.
Are trees for different word lengths converging on a stable tree or is the tree based on each n-letter word different?
The tree based on the complete dataset is shown in Figure 1, and the tree based on the nuclear dataset is shown in Figure 2, with the results from the single-locus analyses indicated in the latter figure.
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