In SA27063 × SA3054, a second QTL, rnpm3 was located on linkage group one.
They confirm one of the CDs on linkage group A9 previously inferred [ 9, 10], but indicate that At2B (AKI), as represented on linkage group A9, may be truncated.
Note: QTL 1 is one between markers GMKF167a and GMKF167b on linkage group 12. QTL 2 is one between markers sat-274 and BE801128 on linkage group 24.
Two QTLs on linkage group 4 and one on linkage group 1 were detected by both models.
In year 1, QTLs were mostly detected to locate on linkage group 4, with one on linkage groups 1, 3 and 6, respectively.
Markers placing scaffolds on linkage groups other than the one assigned by the GBS data were dropped.
Additional filtering based on linkage was applied to avoid potential back mutations among shared SNPs.
It includes downloads for various GIS Tools, overviews of corridor concepts, and reports on linkage designs.
Previously, the white gene was mapped near anonymous EST markers on linkage group 3 of the Ambystoma meiotic map25.
Due to very small sample sizes for some samples, no additional pruning of markers based on linkage disequilibrium was performed.
Based on linkage disequilibrium we estimated an effective population size Ne = 20.3 (90% CI = 15 28).
