Sentence examples for on individual alignments from inspiring English sources
Figure 1 shows the statistics of classification performance on individual alignments.
These analyses were also performed on individual alignments of mitochondrial and nuclear loci (cyt b and concatenated S7 introns).
The jModelTest program (Posada 2008) was used on individual alignments of orthologs to estimate the best-fit models of nucleotide substitution and obtain Phyml's (Guindon and Gascuel 2003) maximum likelihood trees and estimates of model parameters for 88 reversible models of nucleotide substitution (table 1).
Though the progressive movement has enormous political breadth, an overwhelming focus on individual alignment is hurting the left.
The 50%% majority rule consensus tree of maximum likelihood trees constructed with RAxML [ 9] on the alignments of individual proteins failed to completely resolve the phylogeny (Additional file 4: Figure S4) due to short lengths (median length: 209 amino acids) of individual alignments.
Scores for individual alignments are calculated based on the method of Wilbur and Lipman [ 53].
To get insight in the informative character of the selected protein-coding genes, maximum parsimony analyses were run on the individual alignments comprising a total of 33 669 bp with PAUP* 4.0b10 using heuristic search, random addition with 100 replicates and tree bisection-reconnection (TBR) swapping.
Briefly, based on each individual alignment, initial models were generated by copying atomic coordinates for the main chain (excluding any insertions/loops) and for the side chains of residues that were identical in the target and template proteins.
They may click on the pixels that represent individual alignments to identify which protein-to-protein comparison is represented.
Estimated rates of evolution on the super gene and the individual alignments.
Orthologous genes were identified by Mauve and individual alignments of each one of the 896 genes (considering the total number of annotated genes on the available D/UW-3/CX sequence) were extracted from the whole-genome alignment.
