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The versatility of this method to quantify rumpling is demonstrated on experimental datasets from a β-phase bond coat with high levels of noisy or missing data.
For validating its impact on protein function prediction, RSCP is tested on experimental datasets: Uniref50, SwissProt, and TrEMBL, respectively.
We tested the latest version of Oases (0.2.01) on experimental datasets and found that Oases produces longer assemblies than previous de novo RNA-seq assemblers.
The reconstruction of different kinds of networks (e. g., metabolic, signaling, protein interaction and gene regulatory networks [ 1]) based on experimental datasets allows for the representation of the diverse nature of biological systems on a global scale.
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We perform support vector regression, sequential minimal optimization regression and multilayer perceptron algorithms with linear and poly kernels on experimental dataset for appropriate model selecting, and multilayer perceptron model works well for its distinguished prediction performance with high correlation coefficient and low error values.
A comparison of the performance of four existing predictive correlations (i.e. Kumar et al. [3] correlation, Omebere-Iyari et al. [5] correlation, Schubring et al. [8] correlation and Al-Sarkhi et al. [9] correlation) based on experimental dataset mentioned above (154 data points) is made.
Tfu_v3 based on experimental dataset confirms approximately 50% of these reactions but also predicts no active flux through these pathways.
Although those studies performed a profound analysis on a few datasets, we think a superficial comparison on a large number of experimental datasets is more important than a profound one on a few experimental datasets when estimating the methods' practical ability to detect DEGs, as the superficial comparison on a large number of datasets can also prevent selection bias regarding the datasets.
A profound comparison on a large number of experimental datasets should be of course the most important.
We therefore applied the prediction analysis based on directional phase fields to experimental datasets recorded from CA1 place cells (Mizuseki et al., 2014).
The model was calibrated for four genotypes on two experimental datasets collected on plants grown under standard non-limiting conditions and moderate water stress.
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