It provides a platform for the data mining of abiotic stress responsive QTLs, as well as browsing and annotating associated traits, their location on a sequenced genome, mapped expressed sequence tags (ESTs) and tissue and growth stage-specific expressions on the whole genome.
If an experimental optical map includes a particular restriction fragment, and we know, from an in silico map based on a sequenced genome of the same species, the DNA sequence of the homologous in silico fragment, then we can infer that the optical map includes a homologous sequence.
As a proof-of-principle for whole-genome sequencing we performed this partial-digest approach on a sequenced strain of E. coli.
Employing sequences from a candidate gene and the 1000 Genomes Project, Fridley et al. (2010) demonstrated the feasibility of imputing genetic variants based on a sequenced proportion of a study sample, and they suggested sequencing "the largest and most diverse" subset.
The ability to ascertain and genotype ME insertions without relying on a sequenced reference genome would make ME-Scan very widely applicable: by designing the appropriate amplification and sequencing primers, one could study the population dynamics of nearly any ME family in any organism in detail.
Marshall aid was premised on the identification of structural constraints, on national targets for the main economic variables and on a sequenced approach to meeting objectives.
The use of systematic_locus_IDs (described in detail later in this manuscript) provides a systematic approach to the assignment of gene identifiers, as well as easy recognition of the location of the locus on a sequenced rice genome.
The HCC1187 data is used to test the performance on a sequenced cancer genome with less than 100% tumor purity.
