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In every case, the orc1/ cdc6 genes are each located on a different strand (Additional file 2: Figure S2).
All sequences were aligned to the revised Cambridge sequence (Andrews et al. 1999) using ClustalW (Thompson et al. 1994), and coding sequences for 12 protein-coding genes (excluding ND6, which is encoded on a different strand than the rest of the genes and has biased nucleotide composition; Yang et al. 1998) were extracted from the alignments.
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A different strand of research focuses on users from a specific profile.
TR and VR can even be on a different DNA strand to the corresponding RT gene.
More specifically: in (1), annotated overlap was identified by searching overlapped genes from different strands within Ensembl annotation; in (2) if an assembled contig, representing genuine extension of one gene (at 5′ or 3′ end), overlapped with another gene on different strand, it was considered as a sense/antisense pair.
He responded that he didn't expect a "signing and dancing" agreement, but he was hoping for "progress on a number of different strands".
For example, yeast homeodomain TF MATALPHA2 binds to DNA as a homodimer in several different relative orientations, including on the same or on different strands [ 46].
They suggested the presence of different motifs immediately preceding a certain site during sequencing on different strands leaves one strand significantly more prone to phasing error than the other.
This type of duplication can organize paralogs distantly and also locally, in a palindromic way on different strands.
The genes can be on the same or on different strands.
Note that within the Ensembl annotation, a substantial number of genes overlap, either on the same strand or on different strands.
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