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This data implies the Archaeal ancestor of EF-2 had a 4 residue derived insertion regardless of which alignment is used.
Notably, taxator-tk showed the best macro-precision of all similarity-based programs and all ranks, regardless of which alignment kind was used.
Thus, regardless of which alignment parameter was used, similar divergence estimates were recovered between the ancient sample and the horse mitochondrial genome reference (BQ ≥ 35: 1.240–1.288%) when using the horse mitochondrial as a reference for mapping (Accession number: NC_001640).
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(122) Alignment of a single-particle data set is accomplished by a series of comparisons in which alignment parameters are determined on the basis of correlations of each raw image with one or a set of reference images.
"Claiming something like a non-GMO or organic food will help you lose more weight is like me saying 'what's the alignment of the stars, and which alignment are you born under, and then I'll tell you whether you can lose weight or not,'" Lowe says.
Dermal fibroblasts align to grooves as shallow as 35 nm if cultured for sufficient time, below which alignment of cells no longer appears to exist [31].
As shown in Figure 8, our method can correctly align >90% of the positions judged by the reference alignment (regardless of which structural alignment tools are used to generate it).
The multiple alignment displayed 924 sites, 66 of which presented alignment gaps.
There are only two regions that could be unequivocally aligned among all the ciliates and of which the alignment did not depend on the program used [ 20, 21].
MTP 178 contains 925 kb of sequence from the homozygous region in RH, of which the alignment to the DM reference genome is poor or broken.
The performance of alignment programs is traditionally tested on sets of protein sequences, of which a reference alignment is known.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com