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The highway was first signed in 1937 on much of the same alignment as today.
Bootstrap support was obtained using 100 bootstrap replicates of the same alignment.
Adjusting these, users can create very different visualizations of the same alignment.
Bayesian analysis of the same alignment retained the same topology and supported the same branches (data not shown).
The reverse complement of the same alignment, however, displays a GC → AC substitution which is inconsistent with a conserved base pair.
This does not present a significant problem when testing different parameter sets of the same alignment algorithm but when comparing different algorithms it is essential to eliminate bias due to superfamily size.
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In the graph of Fig. 4 (right) the result of a high resolution measurement for the same alignment is given.
Pooling the composition of the subject regions of several HSPs within a window is problematic because the HSPs do not necessarily belong to the same alignment, or even to the same linked set of alignments.
Phylogenetic footprint cliques obtained through Tracker were checked carefully for double hits of the same alignments and microsatellites that were eliminated.
Although estimated sample size (ESS) values did not reach above 100 (Additional file 22: Table S13), the topology of recent divergence in the Dothideomycetes and Diaporthales partitions, which was not specified in BEAUti, arranged as previously described in [ 37, 38, 70, 71] and were confirmed by phylogenetic analysis of the same alignments using MrBayes [ 125] and PhyML [ 126].
For this scenario, you'll be making a straight-through cable, which has both ends of the cable with the same alignment of wires, so it's easy enough to do.
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