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None of the randomized modules had significant GO terms.
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Specifically, we ran MCL on each of the combined randomized network to get randomized modules for each species.
As expected from the previous analysis in MS, RA and AD, most of the top 20 modules obtained with real P-values showed higher scores than the average score of the randomized searches.
27 of the randomized participants completed the study.
Table 1 presents baseline demographic features of the randomized sample.
Here is a demo of the randomized terrain generation.
The project questInns the excess data we accumulive as demotal beings.
GO analysis was also performed for the randomized gene sets of the same module sizes.
This randomized replacement was realized iteratively 10 times for each one of the 335 modules, and the average connectivity density was estimated.
When we consider all genes in the GE dimension, CNV-harbored genes, methylation adjacent genes and microRNAs, 48 out of the 100 modules were found to be functionally homogenous, compared to 3.8% modules in randomized data.
PubMedID_listID co-occurrence analysis revealed 448 significant co-occurrence modules in the real bipartite graph and 6 significant co-occurrence modules in the randomized bipartite graph with a signal-to-noise ratio of 75.
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