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This property also reduces the dynamic range of the mapped integer values.
However, these 6% encompass 54% of the mapped physical genome (Figure 2).
Details of the mapped genes are provided through a GBrowse-based web browser (http://lgr.genomecenter.ucdavis.edu).edu
The positions of the mapped genes within the contigs are also listed.
Of the mapped WABMs, 7,253 (55.6%) were probes derived from contigs.
For the visualization of the mapped short reads, the Java software ReadXplorer [ 22] was used.
Thus 27% of the mapped NB-LRR genes appear not to be organised in physical clusters.
Of the mapped read pairs >99.8% were oriented in the assumed FR directions.
Of the mapped DArT markers 34% had hits to genes (Table 5).
Transcript polyadenylation was detected as unmapped adenine residues at the ends of the mapped reads.
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Additional file 1: Sequences of the mapped SLAF markers and genotype of the mapping samples.
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