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Figure 8 Performance comparison of the concatenated full diversity STECC and the concatenated suboptimal-diversity STECC.

Figure 6 Performance comparison of the concatenated full diversity STECC and the concatenated STECC.

An alignment of the concatenated sequences obtained from seven target housekeeping genes identified 278 variable nucleotide sites that define 116 unique sequence types.

The topology of the concordance tree was similar to that of the concatenated tree.

The length of each Fisher vector is determined by F = 2KD, with D the number of dimensions of the concatenated feature descriptors from the dense trajectories.

Maximum likelihood phylogeny of the concatenated data was inferred with RAxML MPI version 2.2.3 [36].

Based on the alignments of the concatenated MLST gene fragments comprising 3284 sites with 383 parsimony informative sites SplitsTree4 [55] was used to construct a neighbor-net [56].

The alignment of the polymorphic sites of the concatenated housekeeping genes demonstrated that clpX of ST64 (PoTiBGr136) and ST69 (e.g. PoHL1) had obviously recombined (Figure 6).

For the Bayesian analysis of the concatenated data, different nucleotide substitution models were applied to each data partition.

Phylogenetic positions based on the split decomposition analysis of the concatenated sequences of 12 housekeeping gene segments are represented.

Phylogenetic analyses of the concatenated sequences split Lophura into five clades including (1) L. bulweri, (2) L. diardi L.