Sentence examples for of the complete alignment from inspiring English sources

The average identity of the complete alignment is 44%.

All alignments to that nearest neighbor, including lower scoring ones, were considered as portions of the complete alignment.

To some extent, sequences from the same population cluster together, but there is little intraspecific structure in the phylogeny of the complete alignment.

PriFi only accepts relatively short alignments and so 4,000 bp segments of the complete alignment were subjected to analysis; each segment overlapped the next by 1,000 bp and a segment including both ends of the linear alignment (to complete the mtDNA circle) was also analyzed.

Maximum likelihood (ML) and Bayesian phylogenetic analyses of the complete alignment (including the ca. 450 bp remnant of the IR common to members of Pinaceae) were completed through the Cipres Science Gateway (http://www.phylo.org/) using RAxML-HPC2 [ 73] and MrBayes [ 74], both on the available teragrid.

(iii) Three additional sets of profiles were used in the case of mt336 alignment: 45 profiles defined using a different threshold on the UPGMA tree, the 25 stable profiles obtained from the analysis of the complete alignment, and the 20 profiles obtained by Le et al. [ 70].

drymifolia (unpublished data) using BLASTN (e-value 10−3) shows that 94.65 % of the transcripts had a significant hit against the genome (98%% of alignment length and minimal sequence identity of 90%% over the complete alignment).

A comparison of U. gibba UT against the U. gibba genome sequence (assembled using Celera; [ 26, 27]) using BLASTN shows that 85.2% of the transcripts have a significant hit against the genome (98% of alignment length and minimal sequence identity of 90% over the complete alignment).

Time of execution was collected after the complete alignment of each reference set.

Relative Entropy (RE) is calculated as the deviation of the amino acid distribution (for a particular column) of one subfamily from that of another subfamily in the complete alignment.

The complete alignment of nucleotides of the 7 Taenia mtDNAs was used to effect sliding window analyses using DnaSP v.5 [ 64].