Sentence examples for of the assembler from inspiring English sources

To successfully enter as ASM program, you would have to type it in using the "ASCII" format of it, which means that you would have to see the machine code version of it, most likely by assembling it on a computer and viewing the output of the assembler (or by examining the assembled version of a program that was already released).

Irrespective of the assembler used, the best assemblies were typically produced from the shortest PE library (e.g., table 1).

In the case with the Milkweed transcriptome the differences between Newbler 2.3 and later versions were not as drastic as reported by Kumar and Blaxter [ 46] suggesting that the impact of the assembler on the length of the assembly varies.

Therefore, the most likely source of this error in all the assemblies is the inability of the assembler to adequately resolve paralogs, which is also a problem in the BWA-based mappings.

Unlike the percentage of reads assembled, the N50 seems to be independent of the assembler and the complexity of the metagenome.

Independent of the assembler used, the contigs obtained remained fairly short compared to traditional assemblies performed with Sanger reads: For GS20 data the average contig length was 130 bases for Eucalyptus [ 17] and 168 bases for chestnut [ 19]; for GS FLX reads of up to 250 bases the average contig length was between 334 bases and 433 bases [ 16- 20].

We assembled both sets of reads with a wide variety of state-of-the-art assemblers.

Based on the underlying search strategies, most of the state-of-the-art assemblers belong practically to two major categories: greedy and graph-based.

The assembly should be carefully evaluated because most of the assemblers were developed for genome assembly and are not designed to deal with the heterogeneity of metagenomic datasets.

The genome assembly performance of the assemblers IDBA_UD53 and SPAdes48 for natural virome data sets with populations with different degrees of diversity and microdiversity was assessed.

Table 1 presents a nearly exhaustive list of the major state-of-the-art sequence assemblers organized by assembly paradigms.