Sentence examples for of reads provided from inspiring English sources

The number of reads provided ∼80-fold coverage on average.

Another 10% of reads provided clear evidence of alternative genomic conformations due to apparent rearrangements across large repeats.

Once the seeds are hashed, the seeds are extended with the set of reads provided by the user as follows.

Two aligners were chosen for comparing results: Eland: as the aligner of choice provided by Illumina, we used Eland as an example of aligners that align the MPSs of reads provided in the seq files.

Interestingly, the number of distinct ISU sequences increases linearly with the number of reads, providing further evidence that increasing the number of reads increases the background number of ISUs that contain PCR-derived errors.

As described by Ruby et al. [13], the observation of both a candidate miRNA and a corresponding candidate miRNA* in a set of reads provides particularly compelling evidence for Dicer-like processing from an RNA hairpin.

All assembly visualization packages face the following challenges when dealing with NGS data: processing a very large number of reads, providing high-quality rendering and navigation of assembled reads, and supporting a widening range of assembly formats.

Advances in NGS and the ability to generate deep coverage data in the form of millions of reads provide exceptional resolution for studying the underlying genetic diversity of complex viral populations.

The measures of reads per kilobase of exon model per million mapped reads (RPKM) [ 63, 64] or fragments per kilobase of transcript per million mapped reads (FPKM) for paired-end reads [ 65] offer normalization for coding-RNA length and the total number of reads, providing an analog of the relative molar concentrations of transcripts.

To investigate the quality of sequencing reads provided by NGS platforms, we analyzed whole-genome sequencing data of E. coli DH1 ME8569 strain.

This approach strongly benefits from the availability of longer reads (such as from 454 data) or the sheer number of data reads provided by next-generation sequencing platforms (such as the Illumina HiSeq, etc).