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For both direct and indirect links in each analysis, we evaluated relevant false discovery rates by looking at the left tail of the z-score distribution (that is, the depletion side) where no significant findings were expected and, alternatively, by permutation tests on random gene sets of matching size and topological properties.
For each of the six sizes of regions, comparisons were made between the three types of "defined" regions (cis-eQTL clusters, control clusters, and regions centered on single cis-eQTLs) and the fourth type of region, consisting of random regions of matching size.
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A cross-validation test confirmed that the held-out SGLs received significantly higher SE scores than the held-out DGLs (t = 8.777; p-value = 6.204e-16; Welch two-sample t-test; Figure 6A) and each was higher than random control modules of matching sizes (t = 4.802; paired7e-06; paired Student t-test; Figure S2c d).
Beginning from starting position, different defined window sizes lead to several sequence cutouts of matching sizes.
Representative examples that compare two cis-eQTL clusters and control clusters of matching sizes are shown in Figure 3. Altogether, polymorphic SINEs appeared to be a signature characteristic of cis-eQTL regions.
After submitting the list of identifiers, the application maps them onto an interaction network (Section 4), and computes topological properties for the entire network, the uploaded gene/protein set and random sets of matched sizes.
By using the weight matrices, a specific score can be calculated for any segment of the matching size, based on its nucleotide sequence.
The same number of plots, in matching sizes, was established in nearby continuous forest (referred to as intact forest plots).
Still, for a device that's approximately the size of a big box of matches, the size of the reserve alone is the real draw here, and the cable is just a nice bonus.
Briefly, we designed test primer pairs of matched product size amplifying DEFB103 (5′-TATTATTGCAGAGTCAGAGGTGGCCG-3′ and 5′-GTGTCGAGCACTTGCCAATCTGTT-3′) and DEFB2L (5′-TACTGCTGCAGACACTCTGCCC-3′ and 5′-TGAACCTGCGGTGGCCTCGT-3′).
Assembly for contigs was performed with match size of 50, minimum match percentage of 97, minimum sequence length of 100.
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Since I tried Ludwig back in 2017, I have been constantly using it in both editing and translation. Ever since, I suggest it to my translators at ProSciEditing.

Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com