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Interestingly, in all the species, the number of "expanded" gene families is much larger than that of "shrunk" gene families.
We illustrated the concept of expanded gene region in Figure 1.
However, A. pisum possessed a larger number of expanded gene families.
The number of expanded gene family was significantly higher for P. fici than that of the reference fungi.
peruviana presents a different set of expanded gene arrays that can result in different expression profiles between both species.
Examples of expanded gene families in the hydrolytic functional class included those with predicted chitin deactylase, cutinase, amino peptidase and feruloyl esterase activities, among others.
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The n is the number of expanded genes based on the seed candidate genes for a disease and m is the number of genes in the expanded candidate gene set and positively reported in GAD as well.
We have investigated functional divergence of coding regions of expanded genes.
This data suggested that expression divergence of expanded genes also significantly contributed to the divergence of two sorghum lines.
Table 1 shows the top 15 families sorted by the number of expanded genes (gain) in NMR.
Our data showed that more than 50% of expanded genes by these mobile elements were under expression divergence, similar to the role of segmental/tandem duplication.
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