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Second, the occurrence of divergent elements at the same site in the gene, and their phylogenetic distribution, suggest multiple acquisitions of elements at the site.
When this custom repeat library was used with RM [ 15], discovery of divergent elements increased the estimated repetitive content of the M. graminicola genome to 16.7% (6.7 Mb) (Table 1).
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Such models have been applied to systems ranging from a single cis-regulatory element to diverse collections of highly divergent elements bound by a wide range of proteins [ 3, 6].
Thus, we will not obtain full-length or near full-length conear full-lengthivergent elements and sucontigsent abundances will be underestimated.
This method, in comparison with BLAST or RepeatMasker approaches, may be more permissive and thus allow for the identification of more divergent elements.
A comparative discussion of the results, as well as of the convergent and divergent elements of the two groups of actors and of certain specific aspects, is presented elsewhere [ 4].
This study has taken a much-needed first step in determining the conserved and divergent elements of the butterfly oogenesis GRN (including maternal regulation of embryonic patterning) and establishes P. aegeria as an eco-evo-devo model system for the study of butterfly oogenesis.
Furthermore, as a first step in determining the conserved and divergent elements of the butterfly oogenesis GRN (including maternal regulation of zygotic gene expression and embryonic patterning), we investigated which of the genes known to play an essential role in D. melanogaster or B. mori oogenesis were also transcribed by P. aegeria.
Since Albertus's nature, however, was given more to conquest than to the establishment of order, the business of integrating all of these new and naturally divergent elements into a somewhat consistent intellectual structure waited for another, his pupil Thomas Aquinas.
The complete elements – displaying specific signatures and isolated from the genome assemblies – enabled the identification of recently transposed or divergent elements, including those present at a single copy.
Although not further explored in this work, observed similarity confirms that divergent elements of the DTC84 type exist in the D. trunculus genome, flanked with their distinctive sequences.
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