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To analyze the biological significance of an alignment, we calculate the fraction of aligned proteins sharing common GO terms.
An output hit from cmsearch consists of an alignment and a score.
Thomas MacEntee, a genealogy educator, writer and speaker, said the explosion of interest in genealogy was because of "an alignment of technology planets".
We present an experimental evaluation of an alignment optimization technique implemented in a parallelizing compiler for Matlab scripts.
With the special example we have here, this small transition of mass will significantly affect the results of an alignment approach such as in [15].
The first step was the construction of an alignment of a comprehensive set of K+-selective channel sequences forming the putative permeation path.
Ultimately, the quality of an alignment will only be as good as reference alignment, regardless of the algorithm.
If the overall percent identity of an alignment was above 95%, the genome scaffold was assumed to be a hit.
Shannon entropy was used to score the variability at each position of an alignment of HIV-1 circulating sequences [19].
Initially, we generated several variants of an alignment containing the entire set of compounds (Supporting Figure S1).
The domain similarities were measured in terms of an alignment score with respect to the BLOSUM62 substitution matrix.
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