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For instance, the same mesh can be used to describe the oblate deformed, spherical, prolate deformed, superdeformed and fission configurations of a given nucleus.
To quantify how similar the GLEM of a given nucleus was to each of the two class average GLEMs, we computed the Jensen-Shannon divergence (26) from the nuclear GLEM to these average matrices, thus getting two distance measures per nucleus, JSGood and JSPoor.
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Here is the center of mass for a given nucleus, is the ground truth flow at centroid and is the estimated flow for each individual algorithm.
To count the number of foci in a given nucleus, the background of the FITC or TRITC channel image was flattened using the "flatten background" function.
We introduced PNAI to describe the absolute number of plastids in close association with a given nucleus.
However, to date no detailed nuclear magnetic resonance (NMR) study has been performed on these materials despite the high potential of this technique for investigating the environment of given nuclei.
Cell density was determined by measuring the distance from the nucleus of a given cell to the nucleus of its nearest neighboring cell, or distance internuclei (DIN).
The intensity of the resonance signal at a particular frequency then indicates the quantity of a given kind of nucleus in a particular location.
The richest structural information can be extracted from NMR spectra since the environment of a given magnetically active nucleus (1H, 13C, 15N, etc).
The resonance frequencies of a given type of nucleus (e.g. 400 MHz for 1H at 9.4 T) thus vary slightly (in some parts per million, or ppm) with its chemical environment a phenomenon known as chemical shift that forms the basis for MR spectroscopy (MRS).
As cells were not imaged throughout their entire thickness in the z direction, we computed mRNA densities by dividing single-cell counts by the volume of the prism with base corresponding to the polygonal segmentation of a given cell's nucleus and height equal to 0.4 μm multiplied by the number of image planes minus one.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com