These comparisons are based both on nucleosome occupancy and the width of the nucleosome peaks.
Average enrichment profiles of H3K4me3 and H3K27me3 over promoter regions evidenced in our metagene analysis are in agreement, in terms of enrichment level and width of occupancy, with recent ChIP-chip data from zebrafish embryos [18].
Figure 4D-E shows that chromatin structure was remodelled in both types of origins, although changes in the NDR width and occupancy in late origins were slightly more pronounced.
Additional file 4: Figure S3C showed similar variations in the NDR-width and occupancy of flanking nucleosomes as described in Figures 4A-D-E.
The width of the pseudobands and their occupancies determine the total generated current.
Gaussian smearing is used to address how the partial occupancies are set for each wave function, and the width of smearing is 0.1 eV.
At the BBS route scale, we developed models relating variations in bird occupancy and abundance to forest and landscape structure within each buffer width using classification and regression trees (CART).
From classes 1 to 6, the NDR width diminished from 193 to 129 bp as did the positioning and occupancy of the nucleosomes located at adjacent positions.
In the next step, the structural parameters such as lattice parameters, profile shape and width parameters, preferred orientation, asymmetry, isothermal parameters, atomic coordinates, and site occupancies were refined in sequence.
Maximum occupancy is calculated depending on the square footage, the number of fire exits, their location and their width.
Tailed frog occupancy was negatively associated with the presence of crayfish, negatively associated with low and high bankfull widths, and positively associated with stand age, although stands less than 5 years old had occupancy rates >50% in the absence of crayfish.
