So when analyzing the alteration in the glycosylation occupancy level, the alteration of glycosylation extent and the alteration of protein should be both taken into consideration.
However, despite this general trend, not all expression pattern changes observed in our analysis are explained by changes in nucleosome occupancy or by alteration of motifs.
We define conditioning as the plant species-dependent engendering specific traits such as carbon flow, root exudation, nutrient uptake, root occupancy of soil space, alteration of the soil microbial community etc. that might affect competitive interactions.
Because most alterations in ribosome occupancy in pab2 pab8 were small and statistically insignificant on a single-gene basis, we searched for global patterns.
Taken together, the observed alterations of codon occupancy in Dnmt2 mutants suggest a reduced translation fidelity due to the lack of C38 methylation on tRNA-Asp.
RSC maintains proper promoter chromatin structure, as RSC mutants exhibit alterations in nucleosome occupancy and spacing at promoters (Badis et al., 2008; Hartley and Madhani, 2009; Ganguli et al., 2014).
Finally, despite partial loss of expression from the variant allele, we show that the c.-28A>G and c.-7C>T variants are not associated with promoter hypermethylation or alterations in nucleosome occupancy.
Comparing the polysomal mRNA levels with changes of steady-state levels allowed identifying alterations in polysomal occupancy, representing the ratio of polysomal mRNA levels to steady-state mRNA levels under the different conditions.
The second pattern (cluster #2 up and down) includes genes whose alteration in ribosome occupancy was in the same direction but augmented compared to the change in their mRNA level.
We demonstrate an integration of monitoring data with a dynamic, metapopulation model developed to assess effects of streamflow alteration on fish occupancy in a southeastern US stream system.
