Sentence examples for obtaining protein structure from inspiring English sources
Considering the difficulties in obtaining protein structure data, this result suggests that the ePPID measure is a good predictor of the number of binding interfaces of a protein.
Among many computational procedures applied to an EM map to obtain protein structure information, in this article we focus on reviewing computational methods that model protein three-dimensional (3D) structures from a 3D EM density map that is constructed from two-dimensional (2D) maps.
The structure-based prediction approach usually produces a better performance; however, obtaining the protein structure is still costly and time consuming.
TOPO2 was used to obtain a protein structure representation (http://www.sacs.ucsf.edu/TOPO2/, last accessed February 10 , 2014.
The major bottleneck in obtaining membrane protein structures is the notorious difficulty involved in expressing and purifying the large quantities of membrane protein sample required for X-ray crystallography.
In the end, we obtained 5,563 protein structures.
This might be a good approach to obtain membrane protein structures as a long term application for hybrid POMs.
Furthermore, the results obtained from the protein structure prediction problem suggest that LLUDE is effective and efficient for computationally expensive problems.
We obtained 67,275 predicted protein structure models with the highest level of confidence, as per [32], for ∼72% of the Arabidopsis proteome.
Apart from the composition features, we also used the feature vectors of the secondary structure information and PSSM profile of the training sequences, obtained from PSIPRED (Protein Structure Prediction Server [33]) and PSI-BLAST analysis respectively [18].
Therefore, based on the residual α-helical structure of the entire cytosolic domain of Harakiri, a 3D model of the helix was obtained using a protein structure prediction program and the structure of the helix formed by a BH3-peptide bound to a Bcl-2 member as template (Materials and Methods).
