The clustering dendrograms are obtained for identifying the coherent groups of generators.
The results obtained for each identified protein are listed in Table 1.
Separate average waveforms were obtained for four identified experimental conditions (High Expectancy Loss, High Expectancy Win, Low Expectancy Loss, and Low Expectancy Win).
However, none of the signaling pathways is very highly ranked and overall significance of the enrichment is low compared to the results obtained for proteins identified by topological scoring.
Verbal autopsy data were obtained for all identified stillbirths during the period.
The coverage obtained for representatives, identified by HMMER, is better than that chosen using FASSM for 33.5% of families.
Protein quantification based on the relative amounts of the different iTRAQ labels was obtained for all identified proteins based on two or more unique peptides, using both ProteinPilot and Mascot algorithms.
The exponentially modified protein abundance index (emPAI) is obtained for each identified protein from Mascot searching and the corresponding protein content in mol percent is calculated as mol % = emPAI/Σ emPAI) * 100 as reported previously [ 40].
Consensus (using IUPAC codes) were edited from cleaned assembled data and used both for estimating the total transcriptome length obtained and for identifying well supported mismatches.
In white spruce, 81.6% of SNPs identified by resequencing had GenTrain score of 0.25 or more (Table 2), which is in the range of that obtained for human SNPs identified from resequencing for polymorphism discovery [ 29].
