This observed over-representation of the AAUAAA motif is statistically significant [see Additional file 2].
We consistently observed over-representation of sequence reads at the ends of amplicons, regardless of the genomic regions or individual samples sequenced.
Although Gilchrist et al. observed over-representation of ATF3, AP-1 and NF-κB target genes, they primarily focused on the co-operative interaction of ATF3 with NF-κB.
By clustering Arabidopsis microarray data obtained under different stress and chemical treatments, Ma, et al. [ 45] observed over-representation of cell wall modification processes in clusters with down-regulated genes.
In the luminal B group of promoters, we observed over-representation of V$EGRF, V$CTCF and V$EKLF etc. Egr-1 which corresponds to the V$EGRF family is known to be associated with cell cycle entry in response to growth stimuli [ 39].
Also, during the study, we did not observe over-representation or under-representation of specific types of families.
Given that we observe over-representation of Sk alleles in the viable spores of Sk/Sp hybrids, this implies that there must be a corresponding death of spores inheriting Sp alleles.
Despite the limited sample size in this study, we observed an over representation of previously reported protective HLA B alleles especially B*57/B*58 within this cohort.
In a statement, Cotton expressed that the drawing constitutes an early example of his interest in "observed over symbolic representation".
This would lead to the observed over-representation of N derived from glutamine in roots and the concomitant overrepresentation of NO3−-N in shoots.
The observed over-representation of findings with standardized p-values between 0.1 and 0.05 might result from the use of standardized p-values in our analyses rather than the p-values given in the original publications.
