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In addition to having homology with cysteine proteases, our examination of the ACCO amino acid sequence revealed numerous sequence motifs (Aitken 1999) for putative protein protein interactions, serine/threonine kinases, tyrosine kinases and glycosylation (Table 3).
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Between the GC-rich motif and the AT-rich motif, there are numerous conserved sequence motifs ranging from 1 to 103 bp in size, and indels ranging from 1 to 116 bp in size.
Taken together, the numerous conserved sequence motifs, conserved cystein residue positions, charged amino acid residue composition and common isoelectric properties between Pmarg-Pif-97 and Pif-97 support the hypothesis that Pmarg-Pif might have a similar activity to Pif-177, and regulate nacre formation in P. margaritifera.
Although we have checked numerous properties (GC/AT-content, local sequence motifs, secondary structure) by bioinformatics, no common feature of these transcripts could be distilled out.
IRS1 contains numerous serine/threonine phosphorylation sites in amino acid sequence motifs, including Ser307, which is assessed in the present study.
The residues of the class I aaRS signature sequence motifs, KISKS and HIGH, make numerous contacts with the pyrophosphate.
Tubulins can undergo numerous post-translational modifications, which occur on specific tubulin sequence motifs.
Recent progress in genome sequencing revealed numerous FtsZ paralogs, especially in archaea; some of these proteins lack the sequence motifs known to be important for the FtsZ-tubulin function, so their biological roles in the respective organisms remain obscure [ 8].
D'haeseleer, P. What are DNA sequence motifs?
Inferring sequence motifs that predict protein function.
These structural motifs perform comparably well with manually generated structural motifs and perform better than sequence motifs.
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