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In this figure, the number of traceable SPR intensity minima is multiplied by the interferences fringes.
The number of traceable SPR peaks is multiplied by the SPs interference and tracking those multiplied SPR peaks enable a better resolution on the absolute value of surficial SPR shift.
Whereas the rate of being traced backwards at time τ since infection (due to detection of any infectee) is equal for all infecteds, the rate of being traced forwards (due to detection of the infector) depends on the generation-time distribution, which in turn depends on the number of traceable generations backwards in the transmission tree (traceable ancestors).
Hence, infectives need to be typed according to the number of traceable ancestors j, and Rq is the largest eigenvalue of the next-generation matrix K with entries kij being the expected number of type-i infecteds (with i traceable ancestors) produced per type-j infected [15].
The holding sampling rate was the number of holdings sampled in a given county divided by the number of traceable sheep holdings in the county.
The choice of denominator (agricultural survey or 'shotgun') had little impact, but using the 'shotgun' denominator derived from AMLS avoided underestimating local sampling where the number of traceable holdings was relatively low compared with the number of agricultural survey holdings, e.g. in Highland, Fife, Kent and East Sussex.
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The second column in Table 4 lists the numbers of traceable pitching views in the test data, which are extracted according to the detected transition effects.
Excluding the Scottish Highlands and Islands strengthened the correlation between numbers of traceable holdings and numbers of agricultural survey holdings in each county (R2 = 0.96), providing reassurance that the tracing process had not introduced substantial geographical bias.
Therefore analyses of gene family evolution in this system are best interpreted as the result of multiple instances of selection in several independent lineages, as opposed to a small number of events traceable to a common ancestor.
Therefore, in order to better mimic the natural, acute CD8 anti-LCMV T cell response, we chose to adoptively transfer only relatively small numbers (2×103) of traceable TCR-Tg LCMV-specific CD8 GFP+ T cells (GP33 41-specific –P14) into C57BL/6 LCMV Arm infected mice.
To check regional bias introduced by tracing, we compared the number of holdings on the list of traceable holdings against the number in the agricultural survey in each county, by using a scatter plot and calculating their correlation.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com