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In plants, a number of MATE proteins were identified by recent genomic and functional studies, which imply that the proteins have substrate-specific transport functions instead of multidrug extrusion.
Variance from the number of mate pairs expected for a copy-neutral locus was indicative of a copy number gain or loss at that position.
The objective is to find a linear ordering of the contigs, which maximizes the number of mate pairs whose pairwise distance equals the insert size.
The total number of mate trials, and number of trials where males courted and the female accepted are provided in Additional file 2: Table S2.
Likewise, the analysis by Maher and colleagues [ 11] ranked their candidates by the total number of mate pairs or long reads that spanned the fusion junction per million mapped reads.
Predicted copy number abnormalities greater than 10 Mb in size were determined, as previously described, by plotting the number of mate pairs mapping within a given window (W 9 11 kB) against the position on each chromosome.
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Both estimates of polyandry (number of alleles, and maximum likelihood number of mating partners), were consistent with a smaller number of mating partners in androchrome females [ 36] Figure 2, although the estimate for maximum likelihood number of mating partners per morph type should be interpreted with caution since it is based on a small sample size of 3 individuals.
For illustration, we calculated a measure of mating advantage of large spores from the proportion of matings with large spores from the total number of mated trials.
The percentage of successful mountings (matings) was calculated by dividing the number of mated partners by the number of mounted partners.
Day of exposure also affected the number of mating pairs observed among treatments (table 1), with the most mating pairs counted on the first day (figure 1).
The first 12 hours of video recordings of each trial were used to obtain the mating frequency (total number of mating events recoded) and the level of polyandry (number of unique partners mated with) for each female.
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Justyna Jupowicz-Kozak
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