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For each BLAST hit, the program derives and saves the following features: Query ID, Query Length, Accession version and GI number, Alignment Length, Score, bit, E-value, Identities, Positives, Gaps, Frame, Organism, and Description.
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The outcomes of the BLAST searches using the representative sequences published for the 12 TEs as the queries revealed the total hit numbers, alignments of the hit sequences, and the bit scores.
The objective function is specifically tuned to finding SV events by taking into account the length and quality of alignments, the number of alignments in the OCS and the genomic distance between those alignments.
A number of alignment tools have been developed to align sequencing reads to the human reference genome.
The alignments are then sorted on their scores, ratios, and the number of alignment blocks.
# M1 > M2: the number of alignments among 992 alignments where M1 results in better likelihood value than M2.
Although ipla-1 mutants showed normal number and alignment of seam cells during the L2 and L3 stages, they exhibited aberrant number and alignment of seam cells at the L4 stage.
Read number and alignment statistics.
The effect of increasing number of alignment sections is also analyzed.
A number of alignment projects have been planned to link English language assessments, domestically produced or internationally recognized, to the CSE.
The numbers next to each clade in Figure 4 are concordance factors indicating the number of alignment blocks that have that clade.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com