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Exact(19)
Input sites are transformed into binary vectors where white indicates nucleotide matches and black represent mismatches.
Next, hits with at least seven consecutive nucleotide matches were selected.
An additional condition is the exclusion of irrelevant target-probe pairs with >18 consecutive nucleotide matches.
Alignment quality is scored by two measures: one takes into account only nucleotide matches, the other measures structural conservation.
Furthermore, none of the 10 photoproteins were exact nucleotide matches to mnemiopsin 1 or 2 from Jafarian et al. [ 21].
The transcripts with the most nucleotide matches (18) at the tasiRNA target site were Glyma07g32300.1 and Glyma13g24240.2.
Similar(40)
The default BLASTn parameters were used (low complexity regions were masked; nucleotide mismatch penalty: -3; reward for nucleotide match: 1).
In these PCR primers, the SNPs were the 3' nucleotide matching to the sequence of its targeted v-rDNA.
Match-Mismatch scores were set to 8 for a match, −12 for a mismatch, and 4 for any nucleotide matching with an 'N'.
A minimum 90 bp nucleotide match with ≥ 70% identity was considered to represent a true match.
Similarly, for each exon, only a single nucleotide match was required for a true positive.
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CEO of Professional Science Editing for Scientists @ prosciediting.com