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Fungal ITS sequences were blasted against the GenBank nucleotide database.
They are also deposited in the NCBI Nucleotide database.
The remaining reads were aligned to the entire NCBI nucleotide database using BLAST.
Microbial taxonomy was assigned using MALT with the full NCBI nucleotide database.
The sequence of the Denisova mtDNA is deposited at the EMBL nucleotide database under accession number FN673705.
The sequences determined in this work are deposited in the NCBI Nucleotide database; a list is available as Supplementary Information.
Using 56 quinoa mRNA sequences available in the NCBI nucleotide database, we estimated the specificity and sensitivity at the exon level to be 69.74% and 43.09%, respectively.
Accession codes: The gtsB gene (PFLU4845) sequences reported in this paper have been deposited in the GenBank nucleotide database under the accession codes KJ787789 to KJ787791.
The sequences for the L. japonicus ecotype GIFU CCaMK gene and mRNA are deposited in the EMBL nucleotide database under accession numbers AM230792 and AM230793.
Complementation of the proteome data with available nucleotide database has helped us to interpret the unique nucleotide sequences.
The beef-specific primer pair was self-designed based on the available gene sequences on NCBI nucleotide database.
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