Exact(16)
The nucleotide comparison of protein B2 showed a different relationship between MrNV and fish nodaviruses.
The nucleotide comparison of coa flanking regions suggested that coa and the flanking regions have not coevolved.
Pairwise nucleotide comparison of the complete pAPEC-1 DNA sequence to that of pAPEC-O1-ColBM (NC_009837) and pAPEC-O2-ColV (NC_007675) were generated with the Artemis comparison tool, webACT (http://www.webact.org/WebACT).org/WebACT
All complete prophage genomes were diverse, such that they could not be aligned by simple nucleotide comparison.
The sequences were aligned through the BioEdit 7.0.9.0, and the nucleotide comparison was done through the BLAST tool, confirming the specificity of the primers employed.
The pairwise nucleotide comparison of the complete coding region showed a high average percentage of similarity (>99.50%) with the recent isolates from Thailand, Malaysia, Singapore, and China.
Similar(44)
This region was 100% identical between the two strains based on nucleotide comparisons (500 bases).
Nucleotide comparisons used BLASTN or Gepard (Krumsiek et al., 2007).
Through this tool, users can perform nucleotide comparisons (BLASTN), whole genome nucleotide comparisons (BLAST Whole Genome), protein comparisons (BLASTP), and nucleotide with protein comparisons (BLASTX).
Viral type was identified when nucleotide comparisons revealed an identity of 95% with the known type.
*Values above the diagonal are for nucleotide comparisons and values below the diagonal are for amino acid comparisons.
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