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The phrase "not only affect" is correct and usable in written English
You can use it when you want to emphasize that something has multiple effects. For example, "Unhealthy diets not only affect physical health, but also mental health."
Exact(60)
"It will not only affect our economy.
Postpartum depression does not only affect mothers.
Decreases in funding do not only affect QS's research indicators.
The outcome will not only affect the border nations.
The shake-up will not only affect Labour.
The closure does not only affect professors and students.
The ruling will not only affect the Premier League.
Chronic truants do not only affect a school's budget.
However, inrush current does not only affect the transformer being switched on.
The restrictions not only affect northern scientists' probing southern forests, but also local scientists.
Of course this would not only affect them; all their competitors would see the same burden".
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Since I tried Ludwig back in 2017, I have been constantly using it in both editing and translation. Ever since, I suggest it to my translators at ProSciEditing.

Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com