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The phrase "not align" is correct and usable in written English
It can be used when discussing discrepancies or mismatches between ideas, plans, or objectives. Example: "The project's goals do not align with the company's overall strategy."
Exact(60)
The regions in the sequence alignment do not align in the structure alignment at all.
So far, most Americans do not align with either movement.
A municipality's recruitment schedule may not align with the academy's class rotation.
She added that it was clear their principles did not align.
In counties where the numbers do not align, the original votes will stand.
He does not align himself with the ministers he represented in court.
There are, moreover, areas where Chinese and British economic interests do not align.
But his view did not align with Hughes' notion of Young's gamesmanship.
We need to understand that our values and our interests simply may not align there.
The evidence base regarding treatment for back pain does not align with clinical practice.
By contrast hESC-EC did not align in the direction of shear stress.
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Since I tried Ludwig back in 2017, I have been constantly using it in both editing and translation. Ever since, I suggest it to my translators at ProSciEditing.

Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com