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It is calculated by comparing the normalized proportion for correct hits to the normalized proportion of false alarms.
In the R-GSN, GO Biological Process has the highest normalized proportion of edges to nodes (71.08) among the five gene set collections.
Consensus index on empirical clustering results across all perturbed datasets was then summarized by the normalized proportion of times that two samples were assigned to the same cluster.
If the normalized proportion does not exceeds the predetermined threshold even after reducing all taxon names (within the set of closest genome fragments) to the taxonomic level of super kingdom, the query sequence is categorized as unassigned.
If the normalized proportion of any of the taxa (within the set of closest genome fragments) does not exceed the predetermined threshold, INDUS reduces the taxon names to successively higher taxonomic levels.
Interestingly, the normalized proportion of genetic potential (DNA) versus expressed metabolic pathways (DNA/RNA) increased linearly between 25, 75 and 110 m depth intervals (0.4, 0.7 and 1.2, respectively) before plateauing at 500 m (1.2).
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The variation among the normalized proportions of each 1-Mbp window in the plasma from normal individuals was very low (average, 47 windows had a z-score £-3£-3 ≥3; range of SD, ±52%).
Finally Parallel-META will visualize the common phylogenetic tree of all samples and the comparison of all components with the normalized proportions.
Heatmaps were generated based on the normalized proportions of reads mapping to pooled viromes from each subject, and were visualized using JAVA Treeview [ 54].
Additionally, these rocks may be categorized based on their abundance and/or normalized proportions of olivine and pyroxene group minerals (>90% mafic minerals).
Because P x(m) was biased by the length of dendrites analyzed in each group, the data were divided by dendrite length as follows, "% of fraction of group m" = (P x(m)/ L(m))/∑ i(P x(i)/ L i)), where L i) is analyzed length of the dendrites in i = (one of the above-mentioned 3 cell groups) and the denominator represents the sum of normalized proportions of the 3 groups in a dataset.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com