Sentence examples for normalized chip from inspiring English sources
Ct values were normalized according to the following equation: ΔCt(normalized ChIP) = {Ct(ChIP) – [Ct input) – log2 (0.1)]}.
We calculated the ChIP signal for each subpeak at each stage by summing the ChIP signal around a 500 bp window center around of each peak position in the normalized ChIP profile generated as described above.
Moreover, the HT-ELC designs achieve at least 70% improvement over the existing hotspot targeted heat sinks in terms of normalized chip temperature non-uniformity, without the need for any additional system level complexity, reducing reliability risks.
To focus on nucleosome dynamics, we first calculated a "delta" ChIP-Seq signal by subtracting the normalized ChIP signal for unstimulated cells from the normalized ChIP signal for dexamethasone-treated cells.
Peak intervals were generated by MACS 1.4.2 (Zhang et al., 2008) using normalized chip and input samples.
A. Normalized ChIP signal from htz1 Δ (upper) and WT (lower) cells along chromosome 1, with the coordinates displayed at the bottom.
A representative snapshot of the normalized ChIP-seq reads of selected genes ACHE and PTGS2 is shown in Fig. 6f.
(c) The distribution of normalized ChIP-seq signal of Med1, H3K27ac and Smad3 at pro-B enhancers.
(b) The distribution of normalized ChIP-seq signal of Med1, H3K27ac, Cdk8, Cdk9 and Smad3 at mESC enhancers.
(a) Average ChIP-seq profile (RPM) of Med1, Brd4, H3K27ac, H3K4me1, DNaseI, p300, Cdk8, Cdk9, Smad3, Oct4, Sox2 and Nanog at the constituents of SEs and TEs, and their flanking 3 kb regions (b) Correlation plot using Pearsons' correlation coefficient with hierarchical clustering of normalized ChIP-seq signals (rpm/bp) of 32 factors at the constituents of SEs (646) and TEs (9981).
Normalized ChIP-chip and Seq-ChIP-chip data described above was viewed within the UCSC genome browser as formatted wiggle tracks (http://genome.ucsc.edu/goldenPath/help/wiggle.html) permitting the visualization of continuous-valued data in the context of annotated genome features.
