Non-overlapping coding regions were aligned using a codon-guided version of the MAFFT method [13] with poorly aligned sites removed using the Gblocks alignment cleaning method [15] implemented in the computer program TranslatorX [16].
A total of 38,844 non-overlapping coding sequences have been annotated to some extent with locus information to the corresponding chromosomes.
(a) Triplet periodicity of 28-mers from yeast data in all non-overlapping coding regions (CDS), putative C-terminal extensions, and distal 3' UTRs indicates that a signature of translation readthrough is visible in extensions on a bulk scale.
Effectively, this behaviour suggests that the DG creates non-overlapping sparse codes for unique events[8].
The remaining 24,638 pairs of non-overlapping protein coding gene pairs were further classified according to their relative orientations, resulting in 6,077 bi-directional (or divergent, ←→), 13,574 uni-directional (→→ or ←←), and 4,987 convergent pairs.
We randomly selected seven non-overlapping groups consisting of coding sequence from 100 expressed genes from chromosome 2L.
We found a total of 8080 non-overlapping C2H2 motifs on coding genes in the human genome.
In addition, each probe set in the GeneChip consists of 11 perfect match (PM) probes (25-mer) that target mostly the non-overlapping portion of the coding region for the corresponding target gene (probe set).
The second, perhaps the major reason, might be that the majority of overlapping genes evolved from non-overlapping genes, so that they originally had independent coding regions and merging of coding regions rarely occurs.
Six groups of protein coding exon segments were defined: 5', internal, and 3' exons, overlapping and non-overlapping with CGIs.
Our proposed non-overlapping window instantly decodable network coding (NOW-IDNC) algorithm always selects a maximal clique κ over the smallest feasible window ω ℓ by following methods described in Section 6 or Section 7. In fact, this algorithm broadcasts the video layers one after another following their decoding order in a non-overlapping manner.
