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Nodes were annotated with taxonomic information at the phylum level.
bA node was predictable if its neighboring nodes were annotated with at least one GO term.
Nodes were annotated by fill-color with methylation coefficients on a truncated scale of −1.5 to 1.5, as shown in the legend.
eThe best of the top 3 predictions was evaluated in cases that neighboring nodes were annotated with at least three GO terms.
During the manual module check, the nodes were annotated by description from NCBI Entrez Gene [ 64], and the links were classified by regulatory relationships stated in the sentences from the relevant literature.
The mean evolutionary rates per subtype were extracted from the trees, averaging over the rates on only those branches for which both the parent and child nodes were annotated with that subtype.
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FunMod iteratively selects all edges of the network and assigns a functional annotation to an edge when two linked nodes are annotated in the same biological group or pathway in the ConsensusPathDB (DB) database [37].
In the work graph, he explained, each of the nodes is annotated with file attachments, conversations, due dates and so forth, and relationships can be mapped between units of work to see how these different elements relate to one another.
Since the linkage of processes is defined using a network in which all nodes are annotated, we excluded the unannotated nodes and the induced edges, to create a fully annotated subnetwork.
The nodes are annotated with Gene Ontology terms, alternate identifiers and synonyms.
In addition, nodes are annotated with different levels of SAR information.
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Since I tried Ludwig back in 2017, I have been constantly using it in both editing and translation. Ever since, I suggest it to my translators at ProSciEditing.

Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com