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The behaviours he has found have convinced him that the universe itself might be a CA, playing out its rules on an incredibly fine-grained network of nodes that define space and time.
The same applies for substructure nodes that define a high number of atom properties or are part of an aromatic system.
Similarly, nodes that define topologies with essential positive feedback loops are only connected to themselves and to nodes with essential positive and negative feedback loops.
Black is also used as the default colour for any internal nodes that define sets of individuals from multiple selfing lines.
In all cases where there is work to do, we always store the nodes that define the left and the right end of the branch (the pruning branch) from which the subtree is to be removed.
Relationships among odontocete families are congruent with the hypothesis of Nikaido et al. [ 15], and several subsequent studies Our Bayesian/ML tree is largely congruent with the parsimony trees obtained from the analysis of our morphological and molecular supermatrix (described below); 21 of 26 nodes that define relationships among extant taxa were the same.
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For each species, ω was estimated on the branch descendant from either the node that defines the D. virilis, D. mojavensis and D. grimshawi clade or the node that defines the clade of remaining species.
Among the highest significance values (also with Biomaps) for overrepresented genes are found in the node that defines the split between Amborella and the rest of the Angiosperms (node 4) and in the split between Monocots and the rest of the rosids (node 5).
The elapsed time along each branch, T ij, was calculated as the difference in divergence times of the starting node, T i, and the ending node, T j, that define the branch.
The graph is constructed identifying the nodes and the properties that define if two nodes are linked or not (in our case: being partner within the same project).
Amongst all of the genes represented in the full data set, it is of course particularly those whose expression changes substantially (indicated by the red and green nodes) across all pairwise comparisons that define patterns (see Figure 4 and Additional File 4 Table S3).
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com