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That means, if a domain is found at other_mammalia node, then it's node of origin will be mammalia node.
The node of origin for a domain is the first node in the hierarchy where its remote homolog is found.
We calculated an edge weight to represent the transmission risk that lizard A (node of origin) posed on lizard B (node of destination).
For halictines, this involved all taxa pairs whose most recent common ancestor (MRCA) was the inferred node of origin of sociality.
When a remote homolog of the domain is found at one other_node, then its node of origin will be its immediate lower node.
When a domain fails to find a homolog at none of the other_node databases, then it's node of origin will be considered as Homo sapiens which is the last node.
Similar(47)
In this study, we have seen a spectrum of patterns of protein sequences originated at different nodes of origin.
Among domains with eukaryotic origin, the percentage of new domains originated at different nodes of origin gradually diminishes from nodes eukaryota (27%, 23,391 domains) to primates (1%, 500 domains).
Starting with the real network, repeatedly, two edges are chosen at random, their target nodes or their nodes of origin are exchanged, provided the resulting edges do not already exist.
We have found a spectrum of proteins with multiple nodes of origin, while only one sequence claimed a maximum of eight nodes of origin.
Based on the nodes of origin of human domains, we have mapped the node-wise distribution of corresponding Pfam families.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com