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We found no transcript that contained both exons.
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There are no transcripts that are significant outliers in this comparison.
Consistent with previous studies indicating functional redundancy between these VIM proteins, we found no transcripts that were significantly misregulated in vim1 mutants.
The no-hit transcript that is encoded on H3_4A11 (Mex_Nohits_2574_Contig_1) is significantly downregulated during spinal cord regeneration, while the no-hit transcript that is encoded on H3_61C19 (Mex_Nohits_221_Contig_2) is significantly upregulated during spinal cord regeneration and downregulated during skin metamorphosis [ 23, 24].
To the best of our knowledge, there is no other similar TPO transcript that has been reported so far.
However, there is currently no evidence for a transcript that links KRAB-A and zinc finger domains in the same open reading frame.
Two pairs of primers were designed for each candidate target, with one pair of primers to test the differentially expressed region of the transcript and the other set for the region of the transcript that showed no or less difference.
For example, the SCC-specific transcript CTA-55I10.1 is a processed transcript that has no predicted protein coding potential.
Any transcript that had no predictive ability and could not be predicted by any other transcript was removed from the network analysis.
The AS CDSs of a reference transcript that have no corresponding region in the query transcript are classified as deletions, and the AS CDSs of the query transcript that have no corresponding region in a reference transcript are classified as insertions.
(This is based on lawyer's notes: there are no transcripts of that deposition, because, as a witness testified on Tuesday, the lawyers for her employer, the William Morris Agency, found the information too sensitive to be put on record).
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com