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n.d: No allelic sequence present in the EST collection.
Discrepancies between the two plastid assemblies were corrected by mapping the Sanger and 454 reads against the two sequences using BLASTN (e-value = 1 × 10−, dust = no) and taking the sequence present in the majority of mapped reads.
No significant alignments were observed to non-mammalian sequence or to mammalian sequence present outside of the X chromosome.
These data suggest that the G4 ligand was able to interact with G4 sequence present at the 3′-end of the negative strand of HCV RNA.
d Orthologous sequence present, but not annotated.
e Orthologous sequence present, but not annotated.
BLR DNA binding consensus sequence present in promoter.
c Orthologous sequence present, but ORF annotated in reverse direction.
These data suggest that during the chronic phase of infection the quasispecies population is highly dispersed into minor variants, with no predominant sequences present.
Apart from faulting activity, the post-basal sequence presents no evidence of rift environment in the strict sense.
A sequence presenting no homology with mRNA databases was used as a negative control.
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