No annotation exists for any of these ORFans, which means that they are currently annotated as hypothetical proteins.
Phevor then generates a list from genes that have been annotated with these terms or their parent terms if no gene annotations exist.
However, no detailed gene annotations exist in the latest version (Zv9) of the zebrafish genome.
Each annotator processes a single document at a time, but annotators may run independently because annotations exist independently of other documents.
In addition to the GM12878 genotype annotation used in this study, other generally more conservative annotations exist.
Provided that appropriate annotations exist, the proposed approach is easily applied to inferring other high level assignments like pathways.
Additionally, for these data trustworthy sets of Gene Ontology (GO) and Interpro annotations exist for analyzing the remaining transcripts.
We therefore concluded that, although incorrect gene annotations exist, they do not influence our results or conclusions.
This allows biocurators to rapidly report how many GO annotations exist for a particular species, how many GO annotations were added during a specific time frame or to quickly find specified sets of annotations that they added.
The term results page has links to both the ontology report page for any term in the list for which annotations exist at RGD, and the ontology browser, where the selected term is highlighted.
The biological knowledge on functions is wide and very heterogeneous but very little is available in databases about such biological processes despite the fact that a considerable wealth of annotations exist on the biological objects (proteins, NAs, small molecules, etc).
